Publications

All articles listed below are available at www.researchgate.net and www.academia.edu.

Brumm PJ, De Maayer P, Mead DA and Cowan DA, 2015, Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies, Frontiers in Microbiology, 12 May 2015, doi.org/10.3389/fmicb.2015.00430.

Brumm PJ Land ML, Hauser LJ, Jeffries CD, Chang YJ, and Mead DA, Complete Genome Sequence of Geobacillus strain Y4.1MC1, a Novel CO-Utilizing Geobacillus thermoglucosidasius Strain Isolated from Bath Hot Spring in Yellowstone National Park, BioEnergy Research, DOI 10.1007/s12155-015-9585-2.

Brumm PJ, Hermanson S, Gowda K, Xie D, And Mead DA, 2015, Clostridium thermocellum Cel5L – Cloning and Characterization of a New, Thermostable GH5 Cellulase, International Journal of Biochemistry Research & Review 6: 62-74.

De Maayer P, Brumm PJ, Mead DA and Cowan DA, 2014, Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis, BMC Genomics, 15:836.

Cao H, Walton JD, Brumm PJ, Phillips GN, 2014, Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum, Journal of Biological Chemistry, 289(37):25624-38 DOI 10.1074/jbc.M114.583286.

Brumm PJ, 2013, Bacterial genomes: what they teach us about cellulose degradation, Biofuels 4(6): 669–681.

Bianchetti CM, Brumm P, Smith RW, Dyer K, Hura GL, et al. 2013. Structure, Dynamics, and Specificity of Endoglucanase D from Clostridium cellulovorans. Journal of Molecular Biology, 425: 4267-85 doi: 10.1016/j.jmb.2013.05.030.

Mead D, Drinkwater C, Brumm PJ. 2013. Genomic and enzymatic results show Bacillus cellulosilyticus uses a novel set of LPXTA carbohydrases to hydrolyze polysaccharides. PLoS ONE 8(4): e61131. doi:10.1371/journal.pone.0061131.

Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, et al. (2013) The Genome Sequences of Cellulomonas fimi and ‘‘Cellvibrio gilvus’’ Reveal the Cellulolytic Strategies of Two Facultative Anaerobes, Transfer of ‘‘Cellvibrio gilvus’’ to the Genus Cellulomonas, and Proposal of Cellulomonas gilvus sp. nov. PLoS ONE 8(1): e53954. doi:10.1371/journal.pone.0053954

Mead DA, Lucas S, Copeland A, Lapidus A, Cheng J-F, Bruce DC, Goodwin LA, Pitluck S, Chertkov O, Zhang X, Detter JC, Han CS, Tapia R, Land M, Hauser LJ, Chang Y-J, Kyrpides NC, Ivanova NN, Ovchinnikova G, Woyke T, Brumm C, Hochstein R, Schoenfeld T, Brumm PJ. Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.  Standards in Genomic Sciences 2012 6(3):366-385.

Gao D, Uppugundla N, Chundawat SP, Yu X, Hermanson S, Gowda K, Brumm P, Mead D, Balan V, Dale BE. Hemicellulases and auxiliary enzymes for improved conversion of lignocellulosic biomass to monosaccharides. Biotechnology for Biofuels. 2011 4:5

Li LL, Taghavi S, McCorkle SM, Zhang YB, Blewitt MG, Brunecky R, Adney WS, Himmel ME, Brumm P, Drinkwater C, Mead DA, Tringe SG, Lelie DV. Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases. Biotechnology for Biofuels. 2011 4:23.

Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, Drinkwater C, Ivanova NN, Mikhailova N, Chertkov O, Goodwin LA, Currie CR, Mead D, Brumm PJ.The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist. PLoS One. 2011 Apr 19;6(4):e18814. PubMed PMID: 21526192.

Brumm P, Mead D, Boyum J, Drinkwater C, Deneke J, Gowda K, Stevenson D, Weimer P. Functional annotation of Fibrobacter succinogenes S85 carbohydrate active enzymes. Appl Biochem Biotechnol. 2011 Mar;163(5):649-57. Epub 2010 Aug 28. Erratum in: Appl Biochem Biotechnol. 2011 Mar;163(5):692.

Brumm P, Hermanson S, Hochstein B, Boyum J, Hermersmann N, Gowda K, Mead D. Mining Dictyoglomus turgidum for enzymatically active carbohydrases. Appl Biochem Biotechnol. 2011 Jan;163(2):205-14. Epub 2010 Jul 16. PubMed PMID: 20635162.

Gao D, Chundawat S, Liu T, Hermanson S, Gowda K, Brumm P, Dale BE, Balan V. Strategy for identification of novel fungal and bacterial glycosyl hydrolase hybrid mixtures that can efficiently saccharify pretreated lignocellulosic biomass. Bioenergy Research. 2010. 3(1):67-8.

Chang Y, Mead D, Dhodda V, Brumm P, Fox BG. One-plasmid tunable coexpression for mycobacterial protein-protein interaction studies. Protein Sci. 2009 Nov;18(11):2316-25. PubMed PMID: 19760663; PubMed Central PMCID: PMC2788286.

Brumm PJ. Fermentation of single and mixed substrates by the parent and an acid-tolerant, mutant strain of Clostridium thermoaceticum. Biotechnol Bioeng. 1988 Aug 5;32(4):444-50. PubMed PMID: 18587741.

Brumm PJ. A dual fermentation process for the production of aliphatic acids. Biotechnol Bioeng. 1987 Oct 20;30(6):784-7. PubMed PMID: 18581498.